STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_03005Pre-rRNA processing protein FTSJ3. (181 aa)    
Predicted Functional Partners:
N307_11299
Putative methyltransferase NSUN6; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
 
 0.997
N307_07755
Nucleolar protein 58.
  
 0.997
N307_11391
RNA helicase.
  
 0.996
N307_06842
Putative rRNA-processing protein EBP2.
   
 
 0.996
N307_01473
Nucleolar complex protein 2.
   
 
 0.996
N307_12067
Pescadillo.
   
   0.995
N307_04427
MKI67 FHA domain-interacting nucleolar phosphoprotein-like.
   
 
 0.995
N307_07827
Guanine nucleotide-binding protein-like 3.
   
 
 0.994
N307_06500
Putative ribosome biogenesis protein RLP24.
   
 
 0.993
N307_01993
Nucleolar GTP-binding protein 1.
   
 
 0.993
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.