N307_09115 protein (Picoides pubescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

N307_09115

Receptor-type tyrosine-protein phosphatase N2. (393 aa)

Predicted Functional Partners:

N307_09114

0.825

N307_02547

0.809

N307_00936

0.677

N307_01481

0.670

N307_04073

0.637

N307_00089

0.630

N307_10461

0.575

N307_01718

0.533

N307_04538

0.533

N307_07670

0.532

Your Current Organism:

Picoides pubescens

NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N307_00089	N307_01718	A0A093G7X6	A0A093GFC9	Phosphatidylinositol phosphatase PTPRQ.	Receptor protein-tyrosine kinase.	0.582
N307_00089	N307_04073	A0A093G7X6	A0A093G803	Phosphatidylinositol phosphatase PTPRQ.	Hepatocyte growth factor receptor.	0.655
N307_00089	N307_04538	A0A093G7X6	A0A093GQX7	Phosphatidylinositol phosphatase PTPRQ.	Receptor protein-tyrosine kinase.	0.582
N307_00089	N307_07670	A0A093G7X6	A0A093G3N8	Phosphatidylinositol phosphatase PTPRQ.	GRB2-related adapter protein.	0.545
N307_00089	N307_09115	A0A093G7X6	A0A093G9S3	Phosphatidylinositol phosphatase PTPRQ.	Receptor-type tyrosine-protein phosphatase N2.	0.630
N307_00089	N307_10461	A0A093G7X6	A0A093GCK8	Phosphatidylinositol phosphatase PTPRQ.	Inactive tyrosine-protein kinase 7; Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.575
N307_00936	N307_01718	A0A093H6S0	A0A093GFC9	Tyrosine-protein phosphatase non-receptor type 11.	Receptor protein-tyrosine kinase.	0.855
N307_00936	N307_04073	A0A093H6S0	A0A093G803	Tyrosine-protein phosphatase non-receptor type 11.	Hepatocyte growth factor receptor.	0.770
N307_00936	N307_04538	A0A093H6S0	A0A093GQX7	Tyrosine-protein phosphatase non-receptor type 11.	Receptor protein-tyrosine kinase.	0.855
N307_00936	N307_07670	A0A093H6S0	A0A093G3N8	Tyrosine-protein phosphatase non-receptor type 11.	GRB2-related adapter protein.	0.828
N307_00936	N307_09115	A0A093H6S0	A0A093G9S3	Tyrosine-protein phosphatase non-receptor type 11.	Receptor-type tyrosine-protein phosphatase N2.	0.677
N307_00936	N307_10461	A0A093H6S0	A0A093GCK8	Tyrosine-protein phosphatase non-receptor type 11.	Inactive tyrosine-protein kinase 7; Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.594
N307_01481	N307_01718	A0A093J036	A0A093GFC9	Tyrosine-protein phosphatase non-receptor type 11.	Receptor protein-tyrosine kinase.	0.812
N307_01481	N307_04073	A0A093J036	A0A093G803	Tyrosine-protein phosphatase non-receptor type 11.	Hepatocyte growth factor receptor.	0.770
N307_01481	N307_04538	A0A093J036	A0A093GQX7	Tyrosine-protein phosphatase non-receptor type 11.	Receptor protein-tyrosine kinase.	0.812
N307_01481	N307_07670	A0A093J036	A0A093G3N8	Tyrosine-protein phosphatase non-receptor type 11.	GRB2-related adapter protein.	0.828
N307_01481	N307_09115	A0A093J036	A0A093G9S3	Tyrosine-protein phosphatase non-receptor type 11.	Receptor-type tyrosine-protein phosphatase N2.	0.670
N307_01481	N307_10461	A0A093J036	A0A093GCK8	Tyrosine-protein phosphatase non-receptor type 11.	Inactive tyrosine-protein kinase 7; Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.594
N307_01718	N307_00089	A0A093GFC9	A0A093G7X6	Receptor protein-tyrosine kinase.	Phosphatidylinositol phosphatase PTPRQ.	0.582
N307_01718	N307_00936	A0A093GFC9	A0A093H6S0	Receptor protein-tyrosine kinase.	Tyrosine-protein phosphatase non-receptor type 11.	0.855