N307_12117 protein (Picoides pubescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

N307_12117

Uncharacterized protein. (220 aa)

Predicted Functional Partners:

N307_08394

0.579

N307_03601

0.551

N307_12116

0.539

N307_12114

0.513

N307_12458

0.513

N307_07090

0.509

N307_10919

0.508

N307_10314

0.418

N307_12325

0.412

Your Current Organism:

Picoides pubescens

NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N307_03601	N307_12114	A0A093GTI9	A0A093IGU9	RNA-binding protein NOB1.	Ras-related protein Rab-30.	0.510
N307_03601	N307_12116	A0A093GTI9	A0A093GGA2	RNA-binding protein NOB1.	Ankyrin repeat domain-containing protein 42.	0.547
N307_03601	N307_12117	A0A093GTI9	A0A093G9X0	RNA-binding protein NOB1.	Uncharacterized protein.	0.551
N307_07090	N307_08394	A0A093GHN8	A0A093FUV2	Leucine-rich repeat-containing protein 66.	Protein FAM32A.	0.589
N307_07090	N307_12117	A0A093GHN8	A0A093G9X0	Leucine-rich repeat-containing protein 66.	Uncharacterized protein.	0.509
N307_08394	N307_07090	A0A093FUV2	A0A093GHN8	Protein FAM32A.	Leucine-rich repeat-containing protein 66.	0.589
N307_08394	N307_12117	A0A093FUV2	A0A093G9X0	Protein FAM32A.	Uncharacterized protein.	0.579
N307_10314	N307_12117	A0A093IFK0	A0A093G9X0	NIPA-like 2.	Uncharacterized protein.	0.418
N307_10919	N307_12117	A0A093IIR3	A0A093G9X0	Thioredoxin-related transmembrane protein 1.	Uncharacterized protein.	0.508
N307_10919	N307_12458	A0A093IIR3	A0A093IQJ1	Thioredoxin-related transmembrane protein 1.	tRNA (guanine(26)-N(2))-dimethyltransferase.	0.514
N307_12114	N307_03601	A0A093IGU9	A0A093GTI9	Ras-related protein Rab-30.	RNA-binding protein NOB1.	0.510
N307_12114	N307_12116	A0A093IGU9	A0A093GGA2	Ras-related protein Rab-30.	Ankyrin repeat domain-containing protein 42.	0.420
N307_12114	N307_12117	A0A093IGU9	A0A093G9X0	Ras-related protein Rab-30.	Uncharacterized protein.	0.513
N307_12116	N307_03601	A0A093GGA2	A0A093GTI9	Ankyrin repeat domain-containing protein 42.	RNA-binding protein NOB1.	0.547
N307_12116	N307_12114	A0A093GGA2	A0A093IGU9	Ankyrin repeat domain-containing protein 42.	Ras-related protein Rab-30.	0.420
N307_12116	N307_12117	A0A093GGA2	A0A093G9X0	Ankyrin repeat domain-containing protein 42.	Uncharacterized protein.	0.539
N307_12117	N307_03601	A0A093G9X0	A0A093GTI9	Uncharacterized protein.	RNA-binding protein NOB1.	0.551
N307_12117	N307_07090	A0A093G9X0	A0A093GHN8	Uncharacterized protein.	Leucine-rich repeat-containing protein 66.	0.509
N307_12117	N307_08394	A0A093G9X0	A0A093FUV2	Uncharacterized protein.	Protein FAM32A.	0.579
N307_12117	N307_10314	A0A093G9X0	A0A093IFK0	Uncharacterized protein.	NIPA-like 2.	0.418