STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_02140Testis-expressed sequence 11 protein. (841 aa)    
Predicted Functional Partners:
N307_09539
HORMA domain-containing protein 1.
   
 
 0.650
N307_08677
Putative E3 SUMO-protein ligase RNF212.
    
 
 0.626
N307_10883
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
   
  
 0.595
N307_04120
Fanconi anemia group M protein.
      
 0.582
N307_12294
MutS protein 5.
   
  
 0.570
N307_09865
Meiotic recombination protein SPO11.
      
 0.557
N307_13895
DNA mismatch repair protein Mlh1.
    
 
 0.550
N307_11572
DNA mismatch repair protein Mlh3.
    
 
 0.550
N307_11352
Zinc finger protein 318.
   
  
 0.511
N307_13685
Activating signal cointegrator 1 complex subunit 3.
   
 
 0.485
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.