STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_03209Ribonuclease 3. (1363 aa)    
Predicted Functional Partners:
N307_14613
Protein argonaute-3.
   
 0.976
N307_12925
Putative ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.
  
 0.976
N307_05108
Putative ATP-dependent RNA helicase DDX17; Belongs to the DEAD box helicase family.
  
 0.949
N307_09155
Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.948
N307_13516
40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.
  
 
 0.948
N307_03314
Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.
   
 
 0.948
N307_12703
Uncharacterized protein.
   
 
 0.946
N307_08918
40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.
  
 
 0.943
N307_02989
Uncharacterized protein.
  
 
 0.942
N307_07065
Double-stranded RNA-binding protein Staufen 1.
    
 0.938
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.