STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_13352Protein fem-1 C. (617 aa)    
Predicted Functional Partners:
N307_05702
UBX domain-containing protein 7.
    
  0.969
N307_13681
Transcription elongation factor B polypeptide 1; Belongs to the SKP1 family.
    
 0.744
N307_05079
RING-box protein 1.
    
 0.742
N307_02786
Folliculin-interacting protein 1.
    
   0.657
N307_10846
COMM domain-containing protein 4.
    
  0.628
N307_09562
COP9 signalosome complex subunit 2.
    
  0.609
N307_08149
RING-box protein 2.
    
 0.608
N307_07694
COP9 signalosome complex subunit 3.
    
  0.606
N307_14040
COP9 signalosome complex subunit 4.
    
 0.590
N307_01886
COP9 signalosome complex subunit 5.
    
 0.589
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.