STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_02801Eukaryotic peptide chain release factor subunit 1. (408 aa)    
Predicted Functional Partners:
N307_06962
ATP-binding cassette sub-family E member 1.
   
 
 0.997
N307_05922
Serine/threonine-protein kinase SMG1; Belongs to the PI3/PI4-kinase family.
    
 
 0.978
N307_01592
Eukaryotic peptide chain release factor GTP-binding subunit ERF3A.
   
 0.963
N307_15112
Uncharacterized protein C4orf21.
   
 0.924
N307_13701
Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
 0.914
N307_13384
Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
 0.914
N307_02227
Ubiquitin-40S ribosomal protein S27a.
   
  0.911
N307_08918
40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.
  
 0.907
N307_10575
60S ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.
  
 0.905
N307_01826
Bifunctional glutamate/proline--tRNA ligase.
  
 0.905
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.