N307_07289 protein (Picoides pubescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

N307_07289

DENN domain-containing protein 3. (206 aa)

Predicted Functional Partners:

N307_07290

0.939

N307_14902

0.728

N307_08648

0.606

N307_11139

0.471

N307_08396

0.471

N307_09993

0.463

N307_09992

0.457

N307_05791

0.457

N307_09526

0.430

N307_08923

0.430

Your Current Organism:

Picoides pubescens

NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N307_05791	N307_07289	A0A093GUX4	A0A093GCL7	Ras-related protein Rab-10.	DENN domain-containing protein 3.	0.457
N307_05791	N307_07290	A0A093GUX4	A0A093IML8	Ras-related protein Rab-10.	DENN domain-containing protein 3.	0.457
N307_07289	N307_05791	A0A093GCL7	A0A093GUX4	DENN domain-containing protein 3.	Ras-related protein Rab-10.	0.457
N307_07289	N307_07290	A0A093GCL7	A0A093IML8	DENN domain-containing protein 3.	DENN domain-containing protein 3.	0.939
N307_07289	N307_08396	A0A093GCL7	A0A093G4H2	DENN domain-containing protein 3.	Ras-related protein Rab-8A.	0.471
N307_07289	N307_08648	A0A093GCL7	A0A093GSU1	DENN domain-containing protein 3.	Ras-related protein Rab-28.	0.606
N307_07289	N307_08923	A0A093GCL7	A0A093G5P6	DENN domain-containing protein 3.	EF-hand calcium-binding domain-containing protein 4B.	0.430
N307_07289	N307_09526	A0A093GCL7	A0A093G0Z5	DENN domain-containing protein 3.	Protein FAM189B.	0.430
N307_07289	N307_09992	A0A093GCL7	A0A093FY83	DENN domain-containing protein 3.	GRB2-associated and regulator of MAPK protein.	0.457
N307_07289	N307_09993	A0A093GCL7	A0A093I800	DENN domain-containing protein 3.	Ras-related protein Rab-10.	0.463
N307_07289	N307_11139	A0A093GCL7	A0A093FW84	DENN domain-containing protein 3.	Ras-related protein Rab-8B.	0.471
N307_07289	N307_14902	A0A093GCL7	A0A093G087	DENN domain-containing protein 3.	Ras-related protein Rab-12.	0.728
N307_07290	N307_05791	A0A093IML8	A0A093GUX4	DENN domain-containing protein 3.	Ras-related protein Rab-10.	0.457
N307_07290	N307_07289	A0A093IML8	A0A093GCL7	DENN domain-containing protein 3.	DENN domain-containing protein 3.	0.939
N307_07290	N307_08396	A0A093IML8	A0A093G4H2	DENN domain-containing protein 3.	Ras-related protein Rab-8A.	0.471
N307_07290	N307_08648	A0A093IML8	A0A093GSU1	DENN domain-containing protein 3.	Ras-related protein Rab-28.	0.606
N307_07290	N307_08923	A0A093IML8	A0A093G5P6	DENN domain-containing protein 3.	EF-hand calcium-binding domain-containing protein 4B.	0.430
N307_07290	N307_09526	A0A093IML8	A0A093G0Z5	DENN domain-containing protein 3.	Protein FAM189B.	0.430
N307_07290	N307_09992	A0A093IML8	A0A093FY83	DENN domain-containing protein 3.	GRB2-associated and regulator of MAPK protein.	0.457
N307_07290	N307_09993	A0A093IML8	A0A093I800	DENN domain-containing protein 3.	Ras-related protein Rab-10.	0.463