N307_03183 protein (Picoides pubescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

N307_03183

Nuclear receptor subfamily 4 group A member 2. (599 aa)

Predicted Functional Partners:

N307_09677

0.858

N307_04713

0.813

N307_04836

0.813

N307_14107

0.777

N307_08945

0.757

N307_07335

0.701

N307_11797

0.611

N307_03832

0.611

N307_07454

0.575

N307_00799

0.566

Your Current Organism:

Picoides pubescens

NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N307_00799	N307_03183	A0A093GU44	A0A093GCM0	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Nuclear receptor subfamily 4 group A member 2.	0.566
N307_00799	N307_04713	A0A093GU44	A0A093GN82	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Retinoic acid receptor RXR-gamma.	0.923
N307_00799	N307_04836	A0A093GU44	A0A093J373	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Retinoic acid receptor RXR-alpha.	0.923
N307_00799	N307_07335	A0A093GU44	A0A093GRP8	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Nuclear receptor corepressor 1.	0.719
N307_00799	N307_08945	A0A093GU44	A0A093GCK1	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Nuclear receptor subfamily 1 group D member 2.	0.870
N307_00799	N307_14107	A0A093GU44	A0A093I9D8	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Mitogen-activated protein kinase.	0.741
N307_03183	N307_00799	A0A093GCM0	A0A093GU44	Nuclear receptor subfamily 4 group A member 2.	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.566
N307_03183	N307_03832	A0A093GCM0	A0A093I5D6	Nuclear receptor subfamily 4 group A member 2.	RAC-alpha serine/threonine-protein kinase; Belongs to the protein kinase superfamily.	0.611
N307_03183	N307_04713	A0A093GCM0	A0A093GN82	Nuclear receptor subfamily 4 group A member 2.	Retinoic acid receptor RXR-gamma.	0.813
N307_03183	N307_04836	A0A093GCM0	A0A093J373	Nuclear receptor subfamily 4 group A member 2.	Retinoic acid receptor RXR-alpha.	0.813
N307_03183	N307_07335	A0A093GCM0	A0A093GRP8	Nuclear receptor subfamily 4 group A member 2.	Nuclear receptor corepressor 1.	0.701
N307_03183	N307_07454	A0A093GCM0	A0A093GLK9	Nuclear receptor subfamily 4 group A member 2.	RAC-gamma serine/threonine-protein kinase.	0.575
N307_03183	N307_08945	A0A093GCM0	A0A093GCK1	Nuclear receptor subfamily 4 group A member 2.	Nuclear receptor subfamily 1 group D member 2.	0.757
N307_03183	N307_09677	A0A093GCM0	A0A093GN76	Nuclear receptor subfamily 4 group A member 2.	Apoptosis regulator Bcl-2.	0.858
N307_03183	N307_11797	A0A093GCM0	A0A093GPE5	Nuclear receptor subfamily 4 group A member 2.	RAC-gamma serine/threonine-protein kinase.	0.611
N307_03183	N307_14107	A0A093GCM0	A0A093I9D8	Nuclear receptor subfamily 4 group A member 2.	Mitogen-activated protein kinase.	0.777
N307_03832	N307_03183	A0A093I5D6	A0A093GCM0	RAC-alpha serine/threonine-protein kinase; Belongs to the protein kinase superfamily.	Nuclear receptor subfamily 4 group A member 2.	0.611
N307_03832	N307_09677	A0A093I5D6	A0A093GN76	RAC-alpha serine/threonine-protein kinase; Belongs to the protein kinase superfamily.	Apoptosis regulator Bcl-2.	0.802
N307_03832	N307_11797	A0A093I5D6	A0A093GPE5	RAC-alpha serine/threonine-protein kinase; Belongs to the protein kinase superfamily.	RAC-gamma serine/threonine-protein kinase.	0.833
N307_03832	N307_14107	A0A093I5D6	A0A093I9D8	RAC-alpha serine/threonine-protein kinase; Belongs to the protein kinase superfamily.	Mitogen-activated protein kinase.	0.883