STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_12878Zinc finger with UFM1-specific peptidase domain protein. (391 aa)    
Predicted Functional Partners:
N307_07331
Polyubiquitin-B.
    
 
 0.954
N307_00856
Polyubiquitin-C.
    
 
 0.920
N307_02227
Ubiquitin-40S ribosomal protein S27a.
    
 
 0.861
N307_14851
2'-5'-oligoadenylate synthase-like 2.
    
 
 0.823
N307_02326
Ubiquilin-1.
    
 
 0.707
N307_15395
Ubiquitin-like 7.
    
 
 0.690
N307_00236
UV excision repair protein RAD23 B.
    
 
 0.685
N307_07375
Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.
    
   0.628
N307_09821
Histone H2A deubiquitinase MYSM1.
      
 0.597
N307_07576
Ubiquitin carboxyl-terminal hydrolase.
      
 0.566
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.