STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_02918U6 snRNA phosphodiesterase. (176 aa)    
Predicted Functional Partners:
N307_03808
Pleiotropic regulator 1.
    
   0.686
N307_11536
SNW domain-containing protein 1.
    
 
 0.683
N307_02959
Cell division cycle 5-like.
    
   0.678
N307_14942
G patch domain-containing protein 1.
    
   0.659
N307_14676
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
   0.658
N307_02101
Pre-mRNA-splicing factor SPF27.
    
   0.657
N307_07043
Putative ATP-dependent RNA helicase DHX35.
    
   0.657
N307_00941
Squamous cell carcinoma antigen recognized by T-cells 3.
    
 
 0.622
N307_08860
Coiled-coil domain-containing protein 12.
    
   0.602
N307_05494
Pre-mRNA-splicing factor ISY1.
    
   0.601
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.