STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_05488BRCA1-associated RING domain protein 1. (706 aa)    
Predicted Functional Partners:
N307_12805
Ankyrin repeat domain-containing protein 32.
  
0.998
N307_08210
Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family.
   
 0.998
N307_12804
Ankyrin repeat domain-containing protein 32.
   
 0.998
N307_02227
Ubiquitin-40S ribosomal protein S27a.
    
 0.994
N307_03505
Ubiquitin carboxyl-terminal hydrolase BAP1.
    
 0.988
N307_11049
Nibrin.
    
 0.987
N307_01784
DNA topoisomerase 2-binding protein 1.
   
 0.985
N307_02794
DNA repair protein RAD50.
    
 0.978
N307_01572
Partner and localizer of BRCA2.
  
 0.977
N307_09894
Ubiquitin-conjugating enzyme E2 variant 1.
    
 0.970
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.