STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_10304RBR-type E3 ubiquitin transferase. (819 aa)    
Predicted Functional Partners:
N307_02227
Ubiquitin-40S ribosomal protein S27a.
    
 0.729
N307_00139
Baculoviral IAP repeat-containing protein 6.
    
 0.685
N307_07712
E3 ubiquitin-protein ligase RNF216.
    
0.679
N307_14102
Ubiquitin-conjugating enzyme E2 L3; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.670
N307_09246
Ubiquitin-conjugating enzyme E2 variant 3.
   
 0.639
N307_08153
E3 ubiquitin-protein ligase TRIP12.
   
 
 0.639
N307_09961
RBR-type E3 ubiquitin transferase.
    
0.629
N307_08149
RING-box protein 2.
    
 0.613
N307_07331
Polyubiquitin-B.
    
 0.603
N307_14851
2'-5'-oligoadenylate synthase-like 2.
    
 0.603
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.