STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_05092Cyclic AMP-dependent transcription factor ATF-4. (353 aa)    
Predicted Functional Partners:
N307_14940
CCAAT/enhancer-binding protein gamma.
   
 0.965
N307_13277
CREB-binding protein.
    
 0.944
N307_04130
Eukaryotic translation initiation factor 2 subunit 1.
     
 0.925
N307_13835
Cyclic AMP-dependent transcription factor ATF-1.
    
 0.904
N307_14766
Cyclic AMP-dependent transcription factor ATF-3.
    
 0.880
N307_11109
Cyclic AMP-responsive element-binding protein 5.
    
 0.879
N307_00578
cAMP-responsive element modulator.
    
 0.878
N307_14813
Centromere protein P.
    
 0.876
N307_00125
Calcium/calmodulin-dependent protein kinase type 1G.
   
  0.865
N307_14520
Calcium/calmodulin-dependent protein kinase type IV.
   
  0.865
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.