STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_06697Bile acid receptor. (467 aa)    
Predicted Functional Partners:
N307_07335
Nuclear receptor corepressor 1.
    
 0.943
N307_04713
Retinoic acid receptor RXR-gamma.
   
0.938
N307_04836
Retinoic acid receptor RXR-alpha.
   
0.938
N307_13467
Peroxisome proliferator-activated receptor gamma coactivator 1-alpha.
    
 0.931
N307_08945
Nuclear receptor subfamily 1 group D member 2.
   
0.895
N307_00799
Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
    
 0.887
N307_02124
UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit.
    
  0.783
N307_13820
Gastrotropin.
   
 0.762
N307_05546
Proteasome activator complex subunit 3.
   
  0.752
N307_14741
Nuclear receptor subfamily 0 group B member 2.
   
 
 0.735
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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