STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_15256Von Willebrand factor A domain-containing protein 5B1. (954 aa)    
Predicted Functional Partners:
N307_00197
60S ribosomal protein L5.
    
 
 0.656
N307_01095
Ribosome production factor 2.
   
 
 0.603
N307_08030
p2Y purinoceptor 1; Belongs to the G-protein coupled receptor 1 family.
   
    0.588
N307_14687
60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
    
 
 0.582
N307_04611
RNA-binding protein 34.
   
   0.438
N307_11299
Putative methyltransferase NSUN6; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
   
   0.415
N307_07317
Notchless protein 1.
   
  
 0.401
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.