STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_09180Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle. (401 aa)    
Predicted Functional Partners:
N307_07983
Triadin.
   
 0.957
N307_10068
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
  0.753
N307_15289
Neurofilament medium polypeptide; Belongs to the intermediate filament family.
   
 0.725
N307_01024
Neurofilament heavy polypeptide; Belongs to the intermediate filament family.
   
 0.725
N307_04660
Myosin light chain 1, skeletal muscle isoform.
   
 
 0.676
N307_09176
Sodium/potassium-transporting ATPase subunit alpha.
 
 
 0.667
N307_02099
AMP deaminase 1.
   
  
 0.635
N307_09821
Histone H2A deubiquitinase MYSM1.
    
 0.628
N307_10461
Inactive tyrosine-protein kinase 7; Belongs to the protein kinase superfamily. Tyr protein kinase family.
    
  0.620
N307_14337
Nipped-B-like.
    
 0.619
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.