STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_04583Prolyl 4-hydroxylase subunit alpha-1. (532 aa)    
Predicted Functional Partners:
N307_13069
Protein disulfide-isomerase.
   
 0.925
N307_02789
Prolyl 4-hydroxylase subunit alpha-2.
  
 
0.876
N307_12083
Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate.
   
 
 0.842
N307_01728
Protein disulfide-isomerase.
   
 0.836
N307_09599
Protein disulfide-isomerase.
   
 0.835
N307_13431
Pyrroline-5-carboxylate reductase; Belongs to the pyrroline-5-carboxylate reductase family.
     
 0.833
N307_09310
Leucine-rich repeat and guanylate kinase domain-containing protein.
   
   0.686
N307_02935
E3 ubiquitin-protein ligase RFWD2.
    
 0.592
N307_06603
Collagen alpha-1(VIII) chain.
    
 0.582
N307_09561
Selenocysteine insertion sequence-binding protein 2-like.
    
 0.566
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.