STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_02895Tumor necrosis factor receptor superfamily member 5. (257 aa)    
Predicted Functional Partners:
N307_05358
CD40 ligand; Cytokine that acts as a ligand to CD40/TNFRSF5. Costimulates T-cell proliferation and cytokine production. Involved in immunoglobulin class switching.
   
 0.964
N307_03860
TNF receptor-associated factor 3.
   
 0.944
N307_14779
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.910
N307_10962
TNF receptor-associated factor 2.
   
 0.874
N307_04869
TNF receptor-associated factor 2.
   
 0.874
N307_12588
Tumor necrosis factor ligand superfamily member 15.
   
 0.817
N307_07205
Tumor necrosis factor ligand superfamily member 13B; Belongs to the tumor necrosis factor family.
    
 0.708
N307_15499
Tumor necrosis factor ligand superfamily member 6; Belongs to the tumor necrosis factor family.
    
 0.682
N307_02163
T-lymphocyte activation antigen CD80.
   
 
 0.675
N307_04985
T-lymphocyte activation antigen CD86.
   
  
 0.660
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.