STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_07368Pre-mRNA-processing-splicing factor 8. (2335 aa)    
Predicted Functional Partners:
N307_03329
U5 small nuclear ribonucleoprotein 200 kDa helicase.
   
 0.999
N307_03936
Pre-mRNA-processing factor 6.
   
 0.999
N307_00372
U5 small nuclear ribonucleoprotein 40 kDa protein.
   
 0.999
N307_09798
Small nuclear ribonucleoprotein F.
   
 0.997
N307_15292
Small nuclear ribonucleoprotein G.
   
 0.996
N307_09733
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.996
N307_02899
Small nuclear ribonucleoprotein-associated protein B.
   
 0.996
N307_14096
Small nuclear ribonucleoprotein Sm D3.
   
 0.996
N307_01791
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.996
N307_02063
Thioredoxin-like 4A.
    
 0.996
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.