STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_00731BTB/POZ domain-containing protein KCTD16. (405 aa)    
Predicted Functional Partners:
N307_02534
Cullin-3; Belongs to the cullin family.
    
 0.667
N307_05480
NEDD8-conjugating enzyme UBE2F; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.553
N307_07013
Transcription factor AP-2-delta.
   
 0.550
N307_13172
BTB/POZ domain-containing protein KCTD2.
    
 0.542
N307_05899
SUMO-conjugating enzyme UBC9; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.541
N307_14320
Gamma-aminobutyric acid type B receptor subunit 2.
    
 
 0.539
N307_07014
Transcription factor AP-2-beta.
   
 0.514
N307_14618
Transcription factor AP-2-epsilon.
   
 0.514
N307_09867
Transcription factor AP-2 gamma.
   
 0.514
N307_15173
Transcription factor AP-2-alpha.
   
 0.514
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.