STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_05159RNA binding protein fox-1 2. (301 aa)    
Predicted Functional Partners:
N307_12351
Protein quaking.
   
 
 0.798
N307_15104
RNA-binding protein with multiple splicing.
   
 
 0.769
N307_05197
RNA-binding protein 24.
  
 
0.745
N307_09863
RNA-binding protein 38.
   
 
 0.695
N307_10110
Heterogeneous nuclear ribonucleoprotein H.
    
 0.680
N307_15359
RNA-binding protein with multiple splicing.
   
 0.680
N307_13116
Serine/arginine-rich splicing factor 2.
  
  
0.651
N307_09445
Heterogeneous nuclear ribonucleoproteins A2/B1.
  
 
 0.630
N307_11968
ELAV-like protein; Belongs to the RRM elav family.
  
 
 0.616
N307_04831
ELAV-like protein; Belongs to the RRM elav family.
  
 
 0.583
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.