N307_09229 protein (Picoides pubescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

N307_09229

Membrane-associated phosphatidylinositol transfer protein 1. (250 aa)

Predicted Functional Partners:

N307_14177

0.900

N307_02457

0.648

N307_13734

0.621

N307_04389

0.619

N307_09609

0.619

N307_02821

0.619

N307_04675

0.598

N307_13249

0.557

N307_07505

0.533

N307_13137

0.533

Your Current Organism:

Picoides pubescens

NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N307_02457	N307_09229	A0A093G4Q4	A0A093GJ33	Dolichol kinase.	Membrane-associated phosphatidylinositol transfer protein 1.	0.648
N307_02457	N307_14177	A0A093G4Q4	A0A093G505	Dolichol kinase.	Membrane-associated phosphatidylinositol transfer protein 3.	0.648
N307_02821	N307_09229	A0A093II14	A0A093GJ33	CTD small phosphatase-like.	Membrane-associated phosphatidylinositol transfer protein 1.	0.619
N307_02821	N307_14177	A0A093II14	A0A093G505	CTD small phosphatase-like.	Membrane-associated phosphatidylinositol transfer protein 3.	0.619
N307_04389	N307_09229	A0A093G991	A0A093GJ33	Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1.	Membrane-associated phosphatidylinositol transfer protein 1.	0.619
N307_04389	N307_14177	A0A093G991	A0A093G505	Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1.	Membrane-associated phosphatidylinositol transfer protein 3.	0.619
N307_04675	N307_09229	A0A093IP11	A0A093GJ33	Sterol O-acyltransferase 1; Belongs to the membrane-bound acyltransferase family.	Membrane-associated phosphatidylinositol transfer protein 1.	0.598
N307_04675	N307_14177	A0A093IP11	A0A093G505	Sterol O-acyltransferase 1; Belongs to the membrane-bound acyltransferase family.	Membrane-associated phosphatidylinositol transfer protein 3.	0.598
N307_07505	N307_09229	A0A093G4Y6	A0A093GJ33	Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.	Membrane-associated phosphatidylinositol transfer protein 1.	0.533
N307_07505	N307_14177	A0A093G4Y6	A0A093G505	Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.	Membrane-associated phosphatidylinositol transfer protein 3.	0.533
N307_09229	N307_02457	A0A093GJ33	A0A093G4Q4	Membrane-associated phosphatidylinositol transfer protein 1.	Dolichol kinase.	0.648
N307_09229	N307_02821	A0A093GJ33	A0A093II14	Membrane-associated phosphatidylinositol transfer protein 1.	CTD small phosphatase-like.	0.619
N307_09229	N307_04389	A0A093GJ33	A0A093G991	Membrane-associated phosphatidylinositol transfer protein 1.	Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1.	0.619
N307_09229	N307_04675	A0A093GJ33	A0A093IP11	Membrane-associated phosphatidylinositol transfer protein 1.	Sterol O-acyltransferase 1; Belongs to the membrane-bound acyltransferase family.	0.598
N307_09229	N307_07505	A0A093GJ33	A0A093G4Y6	Membrane-associated phosphatidylinositol transfer protein 1.	Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.	0.533
N307_09229	N307_09609	A0A093GJ33	A0A093GDF8	Membrane-associated phosphatidylinositol transfer protein 1.	CTD small phosphatase-like 2.	0.619
N307_09229	N307_13137	A0A093GJ33	A0A093G5F7	Membrane-associated phosphatidylinositol transfer protein 1.	Cyclin-dependent kinase 3; Belongs to the protein kinase superfamily.	0.533
N307_09229	N307_13249	A0A093GJ33	A0A093GDZ2	Membrane-associated phosphatidylinositol transfer protein 1.	Protein kinase C beta type.	0.557
N307_09229	N307_13734	A0A093GJ33	A0A093GTV9	Membrane-associated phosphatidylinositol transfer protein 1.	Ubiquitin-like domain-containing CTD phosphatase 1.	0.621
N307_09229	N307_14177	A0A093GJ33	A0A093G505	Membrane-associated phosphatidylinositol transfer protein 1.	Membrane-associated phosphatidylinositol transfer protein 3.	0.900