STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_01841TFIIA-alpha and beta-like factor. (450 aa)    
Predicted Functional Partners:
N307_06543
Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.
    
 0.993
N307_08638
Transcription initiation factor IIB.
   
 0.971
N307_03022
General transcription factor IIF subunit 2.
   
 0.960
N307_12218
General transcription factor IIH subunit 2.
    
 0.957
N307_04410
TFIIH basal transcription factor complex helicase XPB subunit.
    
 0.945
N307_15322
TATA box-binding protein-like 1.
   
 0.943
N307_08353
DNA-directed RNA polymerases I, II, and III subunit RPABC1.
    
  0.941
N307_12773
CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex.
    
 0.937
N307_09243
General transcription factor IIH subunit 1.
    
 0.937
N307_10267
Stonin-1.
 
   
 0.935
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.