STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_10601Zinc finger CCCH domain-containing protein 3. (323 aa)    
Predicted Functional Partners:
N307_00697
Uncharacterized protein.
     
 0.964
N307_07098
Pre-mRNA 3'-end-processing factor FIP1.
    
 0.933
N307_08434
Cleavage and polyadenylation specificity factor subunit 2.
    
 0.933
N307_01569
E3 ubiquitin-protein ligase RBBP6.
    
 0.932
N307_07921
Cleavage stimulation factor subunit 3.
    
 0.931
N307_09870
Cleavage stimulation factor subunit 1.
   
 0.930
N307_03498
Twinfilin-2.
    
 0.928
N307_05676
Cleavage and polyadenylation specificity factor subunit 5.
    
 0.926
N307_03039
Cleavage and polyadenylation specificity factor subunit 3.
   
 0.926
N307_13425
Zinc finger CCCH domain-containing protein 3.
 
     0.920
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.