STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_09218Protein Churchill. (53 aa)    
Predicted Functional Partners:
N307_13863
Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha.
    
 0.985
N307_07135
CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family.
     
 0.864
N307_14734
Alkyl transferase; Belongs to the UPP synthase family.
     
 0.839
N307_04609
Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
   
 0.837
N307_09092
Decaprenyl-diphosphate synthase subunit 1; Belongs to the FPP/GGPP synthase family.
   
 0.837
N307_12815
Nogo-B receptor.
     
 0.812
N307_09530
Farnesyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
   
 0.811
N307_01068
Decaprenyl-diphosphate synthase subunit 2; Belongs to the FPP/GGPP synthase family.
   
 0.804
N307_15501
Phosphatidylinositol N-acetylglucosaminyltransferase subunit C.
     
 0.767
N307_13670
Squalene synthase.
     
 0.759
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.