STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_09765LMBR1 domain-containing protein 2. (688 aa)    
Predicted Functional Partners:
N307_07340
Mitochondrial import inner membrane translocase subunit Tim22.
 
      0.721
N307_09766
Calcyphosin-like.
 
 
  
 0.708
N307_05887
ESF1.
      
 0.519
N307_03386
RNA-binding E3 ubiquitin-protein ligase MEX3C.
   
  
 0.518
N307_01965
GPI ethanolamine phosphate transferase 3.
    
 
 0.518
N307_11978
annotation not available
      
 0.513
N307_00626
Protein FAM214A.
      
 0.510
N307_02768
DEP domain-containing protein 1B.
      
 0.504
N307_12961
AP-1 complex subunit gamma.
   
  
 0.451
N307_09803
Transmembrane and TPR repeat-containing protein 3.
   
    0.434
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.