STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_07549Kelch-like 41. (606 aa)    
Predicted Functional Partners:
N307_15257
Protein PTHB1.
   
 0.940
N307_08451
Tetratricopeptide repeat protein 8.
   
 0.939
N307_15138
Bardet-Biedl syndrome 7 protein.
   
 0.922
N307_09902
Bardet-Biedl syndrome 4 protein.
    
 0.908
N307_01789
Leucine zipper transcription factor-like 1.
   
 0.837
N307_02534
Cullin-3; Belongs to the cullin family.
    
 0.701
N307_05079
RING-box protein 1.
    
 0.660
N307_15431
ADP-ribosylation factor-like 5A; Belongs to the small GTPase superfamily. Arf family.
   
 0.632
N307_01146
ADP-ribosylation factor 4; Belongs to the small GTPase superfamily. Arf family.
   
 0.619
N307_11008
ADP-ribosylation factor-like 6; Belongs to the small GTPase superfamily. Arf family.
   
 0.619
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.