N307_08660 protein (Picoides pubescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

N307_08660

Homeobox domain-containing protein. (183 aa)

Predicted Functional Partners:

N307_13785

0.917

N307_11792

0.643

N307_09985

0.566

N307_09986

0.566

N307_03620

0.557

N307_00502

0.522

N307_06789

0.521

N307_03712

0.512

N307_14708

0.512

N307_04011

0.447

Your Current Organism:

Picoides pubescens

NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N307_00502	N307_06789	A0A093GJ68	A0A093GPE6	Transcription factor E2F4.	Lymphoid enhancer-binding factor 1.	0.590
N307_00502	N307_08660	A0A093GJ68	A0A093GLK5	Transcription factor E2F4.	Homeobox domain-containing protein.	0.522
N307_03620	N307_08660	A0A093GJB4	A0A093GLK5	5-hydroxyisourate hydrolase; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.	Homeobox domain-containing protein.	0.557
N307_03620	N307_13785	A0A093GJB4	A0A093GJR8	5-hydroxyisourate hydrolase; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.	Homeobox protein MSX-2.	0.557
N307_03712	N307_06789	A0A093GPS2	A0A093GPE6	Runt-related transcription factor.	Lymphoid enhancer-binding factor 1.	0.675
N307_03712	N307_08660	A0A093GPS2	A0A093GLK5	Runt-related transcription factor.	Homeobox domain-containing protein.	0.512
N307_03712	N307_13785	A0A093GPS2	A0A093GJR8	Runt-related transcription factor.	Homeobox protein MSX-2.	0.654
N307_04011	N307_08660	A0A093JDW5	A0A093GLK5	Protein odd-skipped-related 1.	Homeobox domain-containing protein.	0.447
N307_04011	N307_11792	A0A093JDW5	A0A093GMP9	Protein odd-skipped-related 1.	Paired box protein Pax-9.	0.407
N307_06789	N307_00502	A0A093GPE6	A0A093GJ68	Lymphoid enhancer-binding factor 1.	Transcription factor E2F4.	0.590
N307_06789	N307_03712	A0A093GPE6	A0A093GPS2	Lymphoid enhancer-binding factor 1.	Runt-related transcription factor.	0.675
N307_06789	N307_08660	A0A093GPE6	A0A093GLK5	Lymphoid enhancer-binding factor 1.	Homeobox domain-containing protein.	0.521
N307_06789	N307_14708	A0A093GPE6	A0A093H6R9	Lymphoid enhancer-binding factor 1.	Runt-related transcription factor 3.	0.675
N307_08660	N307_00502	A0A093GLK5	A0A093GJ68	Homeobox domain-containing protein.	Transcription factor E2F4.	0.522
N307_08660	N307_03620	A0A093GLK5	A0A093GJB4	Homeobox domain-containing protein.	5-hydroxyisourate hydrolase; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.	0.557
N307_08660	N307_03712	A0A093GLK5	A0A093GPS2	Homeobox domain-containing protein.	Runt-related transcription factor.	0.512
N307_08660	N307_04011	A0A093GLK5	A0A093JDW5	Homeobox domain-containing protein.	Protein odd-skipped-related 1.	0.447
N307_08660	N307_06789	A0A093GLK5	A0A093GPE6	Homeobox domain-containing protein.	Lymphoid enhancer-binding factor 1.	0.521
N307_08660	N307_09985	A0A093GLK5	A0A093G193	Homeobox domain-containing protein.	Transthyretin; Thyroid hormone-binding protein. Probably transports thyroxine from the bloodstream to the brain.	0.566
N307_08660	N307_09986	A0A093GLK5	A0A093G7W0	Homeobox domain-containing protein.	Transthyretin; Thyroid hormone-binding protein. Probably transports thyroxine from the bloodstream to the brain.	0.566