STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_04673Torsin-3A. (266 aa)    
Predicted Functional Partners:
N307_14040
COP9 signalosome complex subunit 4.
   
  0.627
N307_10267
Stonin-1.
    
  0.571
N307_11103
Stonin-2.
    
  0.571
N307_09562
COP9 signalosome complex subunit 2.
   
 
  0.562
N307_05473
COP9 signalosome complex subunit 8.
   
 
  0.534
N307_07819
Protein RFT1 homolog; May be involved in N-linked oligosaccharide assembly. Belongs to the RFT1 family.
      
 0.515
N307_11339
Uncharacterized protein.
      
 0.514
N307_04681
Torsin-1A-interacting protein 1.
   
 
 0.495
N307_04680
Torsin-1A-interacting protein 2.
   
 
 0.495
N307_14851
2'-5'-oligoadenylate synthase-like 2.
   
 
  0.457
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.