STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_11400General transcription factor IIE subunit 1. (442 aa)    
Predicted Functional Partners:
N307_15102
Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.
   
 0.995
N307_09243
General transcription factor IIH subunit 1.
   
 0.983
N307_04410
TFIIH basal transcription factor complex helicase XPB subunit.
   
 0.981
N307_08638
Transcription initiation factor IIB.
    
 0.980
N307_03022
General transcription factor IIF subunit 2.
   
 0.973
N307_12218
General transcription factor IIH subunit 2.
   
 0.970
N307_12773
CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex.
    
 0.969
N307_08353
DNA-directed RNA polymerases I, II, and III subunit RPABC1.
    
 0.969
N307_10306
DNA-directed RNA polymerases I, II, and III subunit RPABC4.
    
 0.969
N307_11346
DNA-directed RNA polymerases I and III subunit RPAC1.
    
 0.968
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.