STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_12258Semaphorin-6A; Belongs to the semaphorin family. (1027 aa)    
Predicted Functional Partners:
N307_00575
Neuropilin; Belongs to the neuropilin family.
    
 0.764
N307_04073
Hepatocyte growth factor receptor.
    
 0.749
N307_09552
Semaphorin-6D; Belongs to the semaphorin family.
  
  
 
0.745
N307_09316
Plexin-A4.
    
 0.706
N307_02268
Plexin-D1.
    
 0.649
N307_03973
Plexin-C1.
    
 0.632
N307_11311
Plexin-A1.
    
 0.610
N307_03409
Plexin-A2.
    
 0.610
N307_09315
Plexin-A4.
    
 0.610
N307_11312
Plexin-A1.
    
 0.610
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.