STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_05050Transcription factor 20. (1939 aa)    
Predicted Functional Partners:
N307_07619
Set1/Ash2 histone methyltransferase complex subunit ASH2.
    
 0.796
N307_06471
M-phase phosphoprotein 8.
    
 0.775
N307_08703
Retinoblastoma-binding protein 5.
    
 0.757
N307_07256
Polycomb protein EED.
   
 0.751
N307_07179
Polycomb protein SUZ12.
   
 0.737
N307_02051
Lysine-specific demethylase 6A.
  
 0.716
N307_06352
Myotubularin-related protein 5.
   
 
 0.683
N307_08037
Bromodomain-containing protein 1.
   
 
 0.666
N307_13109
Trinucleotide repeat-containing gene 6C protein.
  
 
 0.662
N307_00317
Chromodomain Y-like 2.
   
 0.637
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.