STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_05065X-ray repair cross-complementing protein 5. (601 aa)    
Predicted Functional Partners:
N307_04406
X-ray repair cross-complementing protein 5.
   
 0.999
N307_02295
DNA-dependent protein kinase catalytic subunit; Belongs to the PI3/PI4-kinase family.
    
 0.988
N307_07203
DNA ligase.
   
 0.987
N307_08210
Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family.
   
 0.986
N307_02794
DNA repair protein RAD50.
   
 0.970
N307_09360
Protein artemis.
   
 0.969
N307_09594
Tumor suppressor p53-binding protein 1.
    
 0.968
N307_10360
Aprataxin and PNK-like factor.
    
 
 0.949
N307_09613
Uncharacterized protein.
   
 
 0.948
N307_09143
Uncharacterized protein.
   
 
 0.927
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.