STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_01859Putative deoxyribose-phosphate aldolase. (292 aa)    
Predicted Functional Partners:
N307_06348
Thymidine phosphorylase.
 
 0.981
N307_10680
Triosephosphate isomerase.
  
 0.949
N307_01400
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
  
 
 0.948
N307_07793
Transketolase.
  
 0.947
N307_06670
Phosphoglucomutase-2; Belongs to the phosphohexose mutase family.
  
 
 0.932
N307_14932
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 
 0.932
N307_15384
Mannose-6-phosphate isomerase.
    
 0.928
N307_10662
Glyceraldehyde-3-phosphate dehydrogenase.
    
 0.928
N307_09235
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.
    
 0.927
N307_03050
Phosphoacetylglucosamine mutase.
  
 
 0.908
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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