N307_10216 protein (Picoides pubescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

N307_10216

NF-kappa-B inhibitor alpha. (239 aa)

Predicted Functional Partners:

N307_07599

0.996

N307_01128

0.995

N307_10068

0.991

N307_08774

0.991

N307_05847

0.990

N307_10763

0.978

N307_06089

0.969

N307_02227

0.969

N307_00746

0.942

N307_08608

0.880

Your Current Organism:

Picoides pubescens

NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N307_00746	N307_01128	A0A093GHP6	A0A093GJE5	F-box/WD repeat-containing protein 11.	Inhibitor of nuclear factor kappa-B kinase subunit alpha.	0.714
N307_00746	N307_02227	A0A093GHP6	A0A093GH46	F-box/WD repeat-containing protein 11.	Ubiquitin-40S ribosomal protein S27a.	0.786
N307_00746	N307_05847	A0A093GHP6	A0A093J0A1	F-box/WD repeat-containing protein 11.	Proto-oncogene c-Rel.	0.655
N307_00746	N307_06089	A0A093GHP6	A0A093GEE6	F-box/WD repeat-containing protein 11.	Nuclear factor NF-kappa-B p100 subunit.	0.753
N307_00746	N307_07599	A0A093GHP6	A0A093GMK6	F-box/WD repeat-containing protein 11.	Inhibitor of nuclear factor kappa-B kinase subunit beta.	0.653
N307_00746	N307_08774	A0A093GHP6	A0A093GWG6	F-box/WD repeat-containing protein 11.	F-box/WD repeat-containing protein 1A.	0.955
N307_00746	N307_10068	A0A093GHP6	A0A093FTM2	F-box/WD repeat-containing protein 11.	S-phase kinase-associated protein 1; Belongs to the SKP1 family.	0.994
N307_00746	N307_10216	A0A093GHP6	A0A093GR23	F-box/WD repeat-containing protein 11.	NF-kappa-B inhibitor alpha.	0.942
N307_00746	N307_10763	A0A093GHP6	A0A093H1X6	F-box/WD repeat-containing protein 11.	Nuclear factor NF-kappa-B p105 subunit.	0.753
N307_01128	N307_00746	A0A093GJE5	A0A093GHP6	Inhibitor of nuclear factor kappa-B kinase subunit alpha.	F-box/WD repeat-containing protein 11.	0.714
N307_01128	N307_02227	A0A093GJE5	A0A093GH46	Inhibitor of nuclear factor kappa-B kinase subunit alpha.	Ubiquitin-40S ribosomal protein S27a.	0.697
N307_01128	N307_05847	A0A093GJE5	A0A093J0A1	Inhibitor of nuclear factor kappa-B kinase subunit alpha.	Proto-oncogene c-Rel.	0.959
N307_01128	N307_06089	A0A093GJE5	A0A093GEE6	Inhibitor of nuclear factor kappa-B kinase subunit alpha.	Nuclear factor NF-kappa-B p100 subunit.	0.956
N307_01128	N307_07599	A0A093GJE5	A0A093GMK6	Inhibitor of nuclear factor kappa-B kinase subunit alpha.	Inhibitor of nuclear factor kappa-B kinase subunit beta.	0.996
N307_01128	N307_08774	A0A093GJE5	A0A093GWG6	Inhibitor of nuclear factor kappa-B kinase subunit alpha.	F-box/WD repeat-containing protein 1A.	0.636
N307_01128	N307_10068	A0A093GJE5	A0A093FTM2	Inhibitor of nuclear factor kappa-B kinase subunit alpha.	S-phase kinase-associated protein 1; Belongs to the SKP1 family.	0.663
N307_01128	N307_10216	A0A093GJE5	A0A093GR23	Inhibitor of nuclear factor kappa-B kinase subunit alpha.	NF-kappa-B inhibitor alpha.	0.995
N307_01128	N307_10763	A0A093GJE5	A0A093H1X6	Inhibitor of nuclear factor kappa-B kinase subunit alpha.	Nuclear factor NF-kappa-B p105 subunit.	0.956
N307_02227	N307_00746	A0A093GH46	A0A093GHP6	Ubiquitin-40S ribosomal protein S27a.	F-box/WD repeat-containing protein 11.	0.786
N307_02227	N307_01128	A0A093GH46	A0A093GJE5	Ubiquitin-40S ribosomal protein S27a.	Inhibitor of nuclear factor kappa-B kinase subunit alpha.	0.697