STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_08682UV-stimulated scaffold protein A. (196 aa)    
Predicted Functional Partners:
N307_08113
Ubiquitin carboxyl-terminal hydrolase 7.
    
 0.989
N307_02770
DNA excision repair protein ERCC-8.
    
 
 0.966
N307_09541
RNA polymerase-associated protein LEO1.
    
 
 0.938
N307_09243
General transcription factor IIH subunit 1.
    
 
 0.894
N307_06130
DNA excision repair protein ERCC-6.
    
 
 0.875
N307_12024
Ubiquitin carboxyl-terminal hydrolase 40; Belongs to the peptidase C19 family.
    
 0.835
N307_09192
DNA damage-binding protein 1.
    
 
 0.803
N307_11150
WD repeat-containing protein 61.
    
 
 0.767
N307_15164
Ubiquitin carboxyl-terminal hydrolase 48.
    
 0.724
N307_12620
Ubl carboxyl-terminal hydrolase 18.
    
 0.724
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.