N307_13521 protein (Picoides pubescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

N307_13521

Harmonin. (878 aa)

Predicted Functional Partners:

N307_05781

0.987

N307_05948

0.976

N307_13751

0.954

N307_13155

0.852

N307_13153

0.852

N307_11687

0.852

N307_10538

0.802

N307_02043

0.725

N307_02111

0.703

N307_01679

0.679

Your Current Organism:

Picoides pubescens

NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N307_01679	N307_05781	A0A093G6B8	A0A093GQT1	Intraflagellar transport protein 57.	Usher syndrome type-1G protein.	0.554
N307_01679	N307_05948	A0A093G6B8	A0A093FXN5	Intraflagellar transport protein 57.	Ankyrin repeat and SAM domain-containing protein 4B.	0.554
N307_01679	N307_13521	A0A093G6B8	A0A093GV16	Intraflagellar transport protein 57.	Harmonin.	0.679
N307_02043	N307_02111	A0A093G558	A0A093IB84	Peripheral plasma membrane protein CASK.	Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3.	0.806
N307_02043	N307_05781	A0A093G558	A0A093GQT1	Peripheral plasma membrane protein CASK.	Usher syndrome type-1G protein.	0.458
N307_02043	N307_05948	A0A093G558	A0A093FXN5	Peripheral plasma membrane protein CASK.	Ankyrin repeat and SAM domain-containing protein 4B.	0.458
N307_02043	N307_13521	A0A093G558	A0A093GV16	Peripheral plasma membrane protein CASK.	Harmonin.	0.725
N307_02111	N307_02043	A0A093IB84	A0A093G558	Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3.	Peripheral plasma membrane protein CASK.	0.806
N307_02111	N307_13521	A0A093IB84	A0A093GV16	Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3.	Harmonin.	0.703
N307_05781	N307_01679	A0A093GQT1	A0A093G6B8	Usher syndrome type-1G protein.	Intraflagellar transport protein 57.	0.554
N307_05781	N307_02043	A0A093GQT1	A0A093G558	Usher syndrome type-1G protein.	Peripheral plasma membrane protein CASK.	0.458
N307_05781	N307_10538	A0A093GQT1	A0A093JCC3	Usher syndrome type-1G protein.	Unconventional myosin-X; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.793
N307_05781	N307_11687	A0A093GQT1	A0A093H070	Usher syndrome type-1G protein.	Unconventional myosin-VIIa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.848
N307_05781	N307_13153	A0A093GQT1	A0A093GF72	Usher syndrome type-1G protein.	Unconventional myosin-XV.	0.848
N307_05781	N307_13155	A0A093GQT1	A0A093G5G9	Usher syndrome type-1G protein.	Unconventional myosin-XV; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.848
N307_05781	N307_13521	A0A093GQT1	A0A093GV16	Usher syndrome type-1G protein.	Harmonin.	0.987
N307_05781	N307_13751	A0A093GQT1	A0A093IUV7	Usher syndrome type-1G protein.	Cadherin-related family member 2.	0.566
N307_05948	N307_01679	A0A093FXN5	A0A093G6B8	Ankyrin repeat and SAM domain-containing protein 4B.	Intraflagellar transport protein 57.	0.554
N307_05948	N307_02043	A0A093FXN5	A0A093G558	Ankyrin repeat and SAM domain-containing protein 4B.	Peripheral plasma membrane protein CASK.	0.458
N307_05948	N307_10538	A0A093FXN5	A0A093JCC3	Ankyrin repeat and SAM domain-containing protein 4B.	Unconventional myosin-X; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.793