N307_00366 protein (Picoides pubescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

N307_00366

Leucine-rich repeat-containing G-protein coupled receptor 5. (845 aa)

Predicted Functional Partners:

N307_14592

0.988

N307_08308

0.967

N307_02842

0.920

N307_06824

0.904

N307_01598

0.904

N307_10461

0.901

N307_09853

0.891

N307_11882

0.871

N307_10785

0.846

N307_13571

0.846

Your Current Organism:

Picoides pubescens

NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N307_00366	N307_01598	A0A093GVC4	A0A093IHN8	Leucine-rich repeat-containing G-protein coupled receptor 5.	Latrophilin-3; Belongs to the G-protein coupled receptor 2 family.	0.904
N307_00366	N307_02842	A0A093GVC4	A0A093GMZ9	Leucine-rich repeat-containing G-protein coupled receptor 5.	R-spondin-4.	0.920
N307_00366	N307_06824	A0A093GVC4	A0A093GVC6	Leucine-rich repeat-containing G-protein coupled receptor 5.	Latrophilin-2; Belongs to the G-protein coupled receptor 2 family.	0.904
N307_00366	N307_08308	A0A093GVC4	A0A093GKS5	Leucine-rich repeat-containing G-protein coupled receptor 5.	E3 ubiquitin-protein ligase RNF43.	0.967
N307_00366	N307_09853	A0A093GVC4	A0A093GQU8	Leucine-rich repeat-containing G-protein coupled receptor 5.	Guanine nucleotide-binding protein G(S) subunit alpha.	0.891
N307_00366	N307_10461	A0A093GVC4	A0A093GCK8	Leucine-rich repeat-containing G-protein coupled receptor 5.	Inactive tyrosine-protein kinase 7; Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.901
N307_00366	N307_10785	A0A093GVC4	A0A093G686	Leucine-rich repeat-containing G-protein coupled receptor 5.	Relaxin-3.	0.846
N307_00366	N307_11882	A0A093GVC4	A0A093GLW3	Leucine-rich repeat-containing G-protein coupled receptor 5.	Leucine-rich repeat-containing G-protein coupled receptor 4.	0.871
N307_00366	N307_13571	A0A093GVC4	A0A093IJJ4	Leucine-rich repeat-containing G-protein coupled receptor 5.	Uncharacterized protein; Belongs to the insulin family.	0.846
N307_00366	N307_14592	A0A093GVC4	A0A093GXI0	Leucine-rich repeat-containing G-protein coupled receptor 5.	R-spondin-1.	0.988
N307_01598	N307_00366	A0A093IHN8	A0A093GVC4	Latrophilin-3; Belongs to the G-protein coupled receptor 2 family.	Leucine-rich repeat-containing G-protein coupled receptor 5.	0.904
N307_01598	N307_06824	A0A093IHN8	A0A093GVC6	Latrophilin-3; Belongs to the G-protein coupled receptor 2 family.	Latrophilin-2; Belongs to the G-protein coupled receptor 2 family.	0.427
N307_01598	N307_09853	A0A093IHN8	A0A093GQU8	Latrophilin-3; Belongs to the G-protein coupled receptor 2 family.	Guanine nucleotide-binding protein G(S) subunit alpha.	0.634
N307_01598	N307_11882	A0A093IHN8	A0A093GLW3	Latrophilin-3; Belongs to the G-protein coupled receptor 2 family.	Leucine-rich repeat-containing G-protein coupled receptor 4.	0.904
N307_02842	N307_00366	A0A093GMZ9	A0A093GVC4	R-spondin-4.	Leucine-rich repeat-containing G-protein coupled receptor 5.	0.920
N307_02842	N307_08308	A0A093GMZ9	A0A093GKS5	R-spondin-4.	E3 ubiquitin-protein ligase RNF43.	0.920
N307_02842	N307_11882	A0A093GMZ9	A0A093GLW3	R-spondin-4.	Leucine-rich repeat-containing G-protein coupled receptor 4.	0.943
N307_02842	N307_14592	A0A093GMZ9	A0A093GXI0	R-spondin-4.	R-spondin-1.	0.837
N307_06824	N307_00366	A0A093GVC6	A0A093GVC4	Latrophilin-2; Belongs to the G-protein coupled receptor 2 family.	Leucine-rich repeat-containing G-protein coupled receptor 5.	0.904
N307_06824	N307_01598	A0A093GVC6	A0A093IHN8	Latrophilin-2; Belongs to the G-protein coupled receptor 2 family.	Latrophilin-3; Belongs to the G-protein coupled receptor 2 family.	0.427