STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_03489Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase. (651 aa)    
Predicted Functional Partners:
N307_00236
UV excision repair protein RAD23 B.
    
 0.997
KATNAL2
Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.
    
 0.990
N307_08447
26S protease regulatory subunit 4; Belongs to the AAA ATPase family.
    
 0.960
N307_05839
Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.
    
 0.912
N307_03310
Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.
    
 0.910
N307_15147
Spermatogenesis-associated protein 5.
    
 0.903
N307_07331
Polyubiquitin-B.
    
 0.882
N307_02227
Ubiquitin-40S ribosomal protein S27a.
    
 0.882
N307_00856
Polyubiquitin-C.
    
 0.862
N307_15395
Ubiquitin-like 7.
    
 0.858
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
Server load: low (24%) [HD]