STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_03515Spermine oxidase. (532 aa)    
Predicted Functional Partners:
N307_01444
Spermidine synthase; Belongs to the spermidine/spermine synthase family.
     
 0.915
N307_00651
Spermine synthase.
     
 0.914
N307_05899
SUMO-conjugating enzyme UBC9; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.846
N307_04706
4-trimethylaminobutyraldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
 0.844
N307_00927
Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.
    
  0.844
N307_09213
4Fe-4S ferredoxin-type domain-containing protein.
     
 0.836
N307_13353
Alpha-aminoadipic semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
  0.835
N307_09778
Lysine-specific histone demethylase 1B.
     
0.799
N307_15043
Amine oxidase.
     
 0.784
N307_15044
Amine oxidase.
     
 0.784
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.