STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_11608ELL-associated factor 1. (224 aa)    
Predicted Functional Partners:
N307_05764
RNA polymerase II elongation factor ELL.
    
 0.965
N307_03770
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.939
N307_04432
ELL-associated factor 2.
  
 
0.929
N307_00742
AF4/FMR2 family member 4.
    
 0.916
N307_08353
DNA-directed RNA polymerases I, II, and III subunit RPABC1.
    
  0.861
N307_02779
DNA-directed RNA polymerase II subunit RPB11-a.
    
  0.861
N307_10306
DNA-directed RNA polymerases I, II, and III subunit RPABC4.
    
  0.861
N307_05270
DNA-directed RNA polymerases I, II, and III subunit RPABC3.
    
  0.861
N307_08164
DNA-directed RNA polymerase II subunit RPB4.
    
  0.861
N307_05120
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
    
  0.858
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.