STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_00236UV excision repair protein RAD23 B. (379 aa)    
Predicted Functional Partners:
N307_11732
DNA repair protein complementing XP-C cells.
   
 0.999
N307_09894
Ubiquitin-conjugating enzyme E2 variant 1.
   
 0.997
N307_03489
Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase.
    
 0.997
N307_09821
Histone H2A deubiquitinase MYSM1.
   
 0.993
N307_01203
26S proteasome non-ATPase regulatory subunit 4.
   
 0.993
N307_05702
UBX domain-containing protein 7.
    
 0.989
N307_04120
Fanconi anemia group M protein.
   
 0.987
N307_08436
Ataxin-3.
    
 0.985
N307_05263
26S proteasome non-ATPase regulatory subunit 2.
    
 0.984
N307_08447
26S protease regulatory subunit 4; Belongs to the AAA ATPase family.
   
 0.982
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.