STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_12497Ras-related protein Rab-9B. (201 aa)    
Predicted Functional Partners:
N307_09297
Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.
    
 0.942
N307_00802
Vacuolar protein sorting-associated protein 41.
    
 
 0.942
N307_14011
Vacuolar protein sorting-associated protein 16.
    
 
 0.937
N307_15229
Vacuolar protein sorting-associated protein 18.
   
 
 0.935
N307_12567
Vacuolar protein sorting-associated protein 11 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS11 family.
    
 
 0.933
N307_14838
Vacuolar fusion protein MON1 A.
    
 0.923
N307_05972
Vacuolar fusion protein CCZ1.
    
 0.920
N307_04232
TBC1 domain family member 15.
   
 0.865
N307_09632
Vacuolar protein sorting-associated protein 33B; Belongs to the STXBP/unc-18/SEC1 family.
    
 
 0.848
N307_00907
Vacuolar protein sorting-associated protein 33A; Belongs to the STXBP/unc-18/SEC1 family.
    
 
 0.848
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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