STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_11575Ribosomal protein S6 kinase-like 1. (430 aa)    
Predicted Functional Partners:
N307_08659
Syntaxin-18.
    
 0.853
N307_04023
Neuroblastoma-amplified sequence.
   
 0.834
N307_04439
Vesicle-trafficking protein SEC22a; Belongs to the synaptobrevin family.
   
 0.684
N307_11057
Vesicle-trafficking protein SEC22c; Belongs to the synaptobrevin family.
   
 0.684
N307_15481
Vesicle-trafficking protein SEC22b; Belongs to the synaptobrevin family.
   
 0.684
N307_13835
Cyclic AMP-dependent transcription factor ATF-1.
   
 0.614
N307_06240
Coatomer subunit beta.
    
 0.596
N307_14338
Vascular endothelial growth factor D; Belongs to the PDGF/VEGF growth factor family.
    
  0.593
N307_02249
Beta-soluble NSF attachment protein.
    
 0.590
N307_01074
Sorting nexin-3.
     
 0.573
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.