STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_11612Calpain-7; Belongs to the peptidase C2 family. (398 aa)    
Predicted Functional Partners:
N307_11611
Calpain-7; Belongs to the peptidase C2 family.
 
     0.944
N307_02645
Calpastatin.
    
 0.771
N307_09310
Leucine-rich repeat and guanylate kinase domain-containing protein.
    
 
 0.673
N307_15466
Programmed cell death protein 6.
   
 0.655
N307_00824
Sorcin.
   
 0.655
N307_14641
Peflin.
   
 0.655
N307_02992
Intersectin-2.
   
 
  0.618
N307_06773
Sorbin and SH3 domain-containing protein 2.
    
   0.541
N307_12625
BH3-interacting domain death agonist.
    
  0.498
N307_11135
Talin-2.
    
 0.461
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.