STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_009004-hydroxyphenylpyruvate dioxygenase. (393 aa)    
Predicted Functional Partners:
N307_11398
Homogentisate 1,2-dioxygenase.
  
 0.993
N307_12957
Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate.
  
 
 0.969
N307_01562
Aspartate aminotransferase.
  
 
 0.914
N307_08736
Aspartate aminotransferase.
  
 
 0.913
N307_00467
Uncharacterized protein.
  
 
 0.902
N307_08568
Uncharacterized protein.
  
 
 0.902
N307_11694
Uncharacterized protein.
  
 
 0.902
N307_11750
DHQ_synthase domain-containing protein.
  
 
 0.874
N307_04761
4-hydroxyphenylpyruvate dioxygenase-like.
  
  
 
0.856
N307_12358
Macrophage migration inhibitory factor.
     
 0.853
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.