STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_01006Putative RNA-binding protein 19. (922 aa)    
Predicted Functional Partners:
N307_00213
Ribosome biogenesis protein BMS1.
   
 
 0.996
N307_05556
Periodic tryptophan protein 2.
   
 
 0.963
N307_09724
Bystin.
   
 
 0.959
N307_03417
WD repeat-containing protein 36.
   
 
 0.949
N307_04149
Ribosome biogenesis protein WDR12.
   
  
 0.944
N307_06429
RNA helicase.
   
 
 0.939
N307_08803
Protein RRP5.
   
   0.937
N307_02497
RNA helicase.
   
   0.936
N307_01000
ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily.
   
   0.936
N307_07478
CCAAT/enhancer-binding protein zeta.
   
   0.935
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.