STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_11142F-box and leucine-rich protein 22. (215 aa)    
Predicted Functional Partners:
N307_10068
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
   
 0.872
N307_02534
Cullin-3; Belongs to the cullin family.
    
 0.771
N307_13859
CDK2-associated and cullin domain-containing protein 1; Belongs to the cullin family.
    
 0.759
N307_13681
Transcription elongation factor B polypeptide 1; Belongs to the SKP1 family.
    
 0.689
N307_08149
RING-box protein 2.
    
 0.648
N307_05079
RING-box protein 1.
    
 0.648
N307_02227
Ubiquitin-40S ribosomal protein S27a.
    
 0.614
N307_00236
UV excision repair protein RAD23 B.
    
 0.588
N307_07331
Polyubiquitin-B.
    
 0.573
N307_14851
2'-5'-oligoadenylate synthase-like 2.
    
 0.573
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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