STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_03104Beta,beta-carotene 9',10'-oxygenase. (526 aa)    
Predicted Functional Partners:
N307_13670
Squalene synthase.
    
 0.695
N307_03571
Unconventional myosin-IXb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 0.655
N307_10796
Unconventional myosin-IXa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 0.651
N307_04675
Sterol O-acyltransferase 1; Belongs to the membrane-bound acyltransferase family.
   
 
 0.609
N307_04971
Patatin-like phospholipase domain-containing protein 4.
     
 0.604
N307_07546
Retinol dehydrogenase 3.
   
 
 0.601
N307_00202
Retinol dehydrogenase 8; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 
 0.594
N307_10353
Actin-binding protein anillin.
   
 
 0.584
N307_06024
Delta-1-pyrroline-5-carboxylate synthase.
      
 0.572
N307_11213
Patatin-like phospholipase domain-containing protein 2.
     
 0.560
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.